- Mycosphaerella aceris
- Mycosphaerella alchemillicola
- Mycosphaerella althaeina
- Mycosphaerella anthemidina
- Mycosphaerella anthurii
- Mycosphaerella arbuticola
- Mycosphaerella asperulata
- Mycosphaerella aucubae
- Mycosphaerella aurantiorum
- Mycosphaerella brunneola
- Mycosphaerella bubakii
- Mycosphaerella castaneicola
- Mycosphaerella chamaeropis
- Mycosphaerella clymenia
- Mycosphaerella crataegi
- Mycosphaerella dalmatica
- Mycosphaerella dianthi
- Mycosphaerella equiseti
- Mycosphaerella equiseticola
- Mycosphaerella filicum
- Mycosphaerella hedericola
- Mycosphaerella hesperidum
- Mycosphaerella huteriana
- Mycosphaerella hypostomatica
- Mycosphaerella isariphora
- Mycosphaerella juniperina
- Mycosphaerella lindingeri
- Mycosphaerella mediterranea
- Mycosphaerella octopetalae
- Mycosphaerella omphalosporoides
- Mycosphaerella oxyacanthae
- Mycosphaerella pinifolia
- Mycosphaerella pomi
- Mycosphaerella pruni-persicae
- Mycosphaerella pyri
- Mycosphaerella pyrolae
- Mycosphaerella rubefaciens
- Mycosphaerella salicicola
- Mycosphaerella schelkovnikovii
- Mycosphaerella silenis
- Mycosphaerella stemmatea
- Mycosphaerella superflua
- Mycosphaerella tingens
- Mycosphaerella vulnerariae
- Mycosphaerella zeae