- Allantoporthe
- Diaporthe
- Diaporthe abdita
- Diaporthe acericola
- Diaporthe acerina
- Diaporthe actinidiae
- Diaporthe adunca
- Diaporthe aesculicola
- Diaporthe aggerum
- Diaporthe alnea
- Diaporthe ambiens
- Diaporthe ambigua
- Diaporthe americana
- Diaporthe ampelina
- Diaporthe amygdali
- Diaporthe amygdalinae
- Diaporthe angelicae
- Diaporthe annonaceum
- Diaporthe arctii
- Diaporthe arctii var. artemisiae
- Diaporthe arecae
- Diaporthe arezzoensis
- Diaporthe asphodeli
- Diaporthe astrostoma
- Diaporthe atlantica
- Diaporthe aucubae
- Diaporthe australis
- Diaporthe baccae
- Diaporthe beckhausii
- Diaporthe berkeleyi
- Diaporthe bohemiae
- Diaporthe bonafidii
- Diaporthe brachystoma
- Diaporthe briardiana
- Diaporthe buxi
- Diaporthe canina
- Diaporthe capsici
- Diaporthe caraganae
- Diaporthe carpini
- Diaporthe castaneae
- Diaporthe castaneti
- Diaporthe castrensis
- Diaporthe caulivora
- Diaporthe celata
- Diaporthe celeris
- Diaporthe cerasi
- Diaporthe chailletii
- Diaporthe chamaeropina
- Diaporthe chamaeropis
- Diaporthe characiae
- Diaporthe chrysoides
- Diaporthe cichorii
- Diaporthe citri
- Diaporthe coemansii
- Diaporthe compressa
- Diaporthe coneglanensis
- Diaporthe conigena
- Diaporthe conjuncta
- Diaporthe convolvuli
- Diaporthe coramblicola
- Diaporthe crassiuscula
- Diaporthe crataegi
- Diaporthe crousii
- Diaporthe crustosa
- Diaporthe cucurbitae
- Diaporthe culta
- Diaporthe cupulata
- Diaporthe cydoniae
- Diaporthe cydoniicola
- Diaporthe cytosporella
- Diaporthe decedens
- Diaporthe decorticans
- Diaporthe delitescens
- Diaporthe delogneana
- Diaporthe demissa
- Diaporthe denigrata
- Diaporthe densa
- Diaporthe detrusa
- Diaporthe dorycnii
- Diaporthe dulcamarae
- Diaporthe elaeagni
- Diaporthe eres
- Diaporthe eumorpha
- Diaporthe fibrosa
- Diaporthe foeniculacea
- Diaporthe foeniculina
- Diaporthe fuckelii
- Diaporthe gardeniae
- Diaporthe hederae
- Diaporthe helianthi
- Diaporthe helicis
- Diaporthe hispaniae
- Diaporthe hordei
- Diaporthe hungariae
- Diaporthe iberica
- Diaporthe ilicis
- Diaporthe importata
- Diaporthe impulsa
- Diaporthe insignis
- Diaporthe juniperivora
- Diaporthe juniperovora
- Diaporthe leptostromiformis
- Diaporthe leucospermi
- Diaporthe longicolla
- Diaporthe lonicerae
- Diaporthe lusitanicae
- Diaporthe malorum
- Diaporthe melonis
- Diaporthe nobilis
- Diaporthe novem
- Diaporthe oncostoma
- Diaporthe padi
- Diaporthe parabolica
- Diaporthe pardalota
- Diaporthe perjuncta
- Diaporthe perniciosa
- Diaporthe phaseolorum
- Diaporthe pseudotsugae
- Diaporthe puella
- Diaporthe pulla
- Diaporthe pustulata
- Diaporthe rehmii
- Diaporthe rosicola
- Diaporthe rudis
- Diaporthe samaricola
- Diaporthe sarmenticia
- Diaporthe sarothamni
- Diaporthe schoeni
- Diaporthe sclerotioides
- Diaporthe scobina
- Diaporthe sojae
- Diaporthe sorbariae
- Diaporthe spartinicola
- Diaporthe spiculosa
- Diaporthe stictica
- Diaporthe strumella
- Diaporthe subordinaria
- Diaporthe syngenesia
- Diaporthe theae
- Diaporthe torilicola
- Diaporthe trinucleata
- Diaporthe vaccinii
- Diaporthe varians
- Diaporthe vexans
- Hyaliappendispora
- Mazzantia
- Paradiaporthe
- Phomopsioides
- Phomopsis
- Phomopsis abietina
- Phomopsis albicans
- Phomopsis ambigua
- Phomopsis amygdaliana
- Phomopsis artemisiae
- Phomopsis asparagi
- Phomopsis begoniae
- Phomopsis brachyceras
- Phomopsis caryophylli
- Phomopsis cinerascens
- Phomopsis cirsii
- Phomopsis clethrae
- Phomopsis coffeae
- Phomopsis conorum
- Phomopsis cordifolia
- Phomopsis corni
- Phomopsis corticis
- Phomopsis crustosa
- Phomopsis dauci
- Phomopsis demissa
- Phomopsis diachenii
- Phomopsis digitalis
- Phomopsis diospyri
- Phomopsis durandiana
- Phomopsis elliptica
- Phomopsis epilobii
- Phomopsis ericaceana
- Phomopsis eriobotryae
- Phomopsis eupatoriicola
- Phomopsis fagopyri
- Phomopsis fragosoana
- Phomopsis hieracii
- Phomopsis hysteriola
- Phomopsis inaequalis
- Phomopsis inconstans
- Phomopsis iridis
- Phomopsis japonica
- Phomopsis juglandina
- Phomopsis kalmiae
- Phomopsis latifolia
- Phomopsis laurella
- Phomopsis lavandulae
- Phomopsis lavitskii
- Phomopsis lentisci
- Phomopsis morphaea
- Phomopsis muelleri
- Phomopsis oblita
- Phomopsis occulta
- Phomopsis oxalina
- Phomopsis padina
- Phomopsis parabolica
- Phomopsis pelargonii
- Phomopsis perniciosa
- Phomopsis phellodendri
- Phomopsis phillyreae
- Phomopsis piceae f. obiones
- Phomopsis pittospori
- Phomopsis platanoidis
- Phomopsis polygonorum
- Phomopsis pruni
- Phomopsis putator
- Phomopsis quercella
- Phomopsis ramealis
- Phomopsis rhynchosiae
- Phomopsis ribatejana
- Phomopsis rusci
- Phomopsis salicina
- Phomopsis sambucina
- Phomopsis scutellariae
- Phomopsis silenes
- Phomopsis skimmiae
- Phomopsis sorbicola
- Phomopsis thujae
- Phomopsis tinea
- Phomopsis tirrenica
- Phomopsis verbasci
- Phomopsis xanthii
- Stenocarpella